Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0201Hypothetical protein; Identified by Glimmer2; putative. (106 aa)    
Predicted Functional Partners:
DVU_0200
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.962
DVU_0204
Lipoprotein, putative.
  
    0.946
DVU_0205
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.946
DVU_0206
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.909
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
    0.896
DVU_0207
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.880
DVU_0202
Holin; Identified by match to protein family HMM TIGR01593.
  
    0.849
DVU_0208
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.844
DVU_0197
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
    0.813
DVU_0198
Minor capsid protein C, degenerate; Identified by match to protein family HMM PF01343.
  
    0.810
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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