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DVU_0202 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0202" - Holin in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
Textmining
[Homology]
Score
DVU_0202Holin; Identified by match to protein family HMM TIGR01593 (162 aa)    
Predicted Functional Partners:
DVU_0201
Uncharacterized protein; Identified by Glimmer2; putative (106 aa)
              0.845
AAS94684.1
Identified by match to protein family HMM PF03864 (334 aa)
              0.843
AAS94683.1
Identified by similarity to OMNI-NTL01RS0859 (127 aa)
              0.823
DVU_0197
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 (566 aa)
              0.818
DVU_0198
Minor capsid protein C, degenerate; Identified by match to protein family HMM PF01343 (439 aa)
              0.815
DVU_0196
Uncharacterized protein; Identified by Glimmer2; putative (131 aa)
              0.815
DVU_0203
Identified by match to protein family HMM PF05838 (182 aa)
              0.790
DVU_0210
Tail sheath protein, putative; Identified by similarity to SP-P79678 (487 aa)
              0.738
AAS94693.1
Identified by similarity to GP-1834290 (63 aa)
              0.738
DVU_0208
Uncharacterized protein; Identified by Glimmer2; putative (185 aa)
              0.738
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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