Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_0213Conserved domain protein. (496 aa)    
Predicted Functional Partners:
DVU_0214
tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.
 
     0.905
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
 
     0.782
DVU_1100
Tail fiber protein, putative.
 
  
 0.775
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
 
     0.760
DVU_0217
Tail protein, putative; Identified by similarity to GP:19483756.
 
     0.749
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
     0.712
DVU_0219
Tail protein, putative; Identified by similarity to GP:19483737.
 
     0.686
DVU_2688
Identified by similarity to SP:P07636; match to protein family HMM PF00665.
  
  
 0.681
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
  
 0.667
DVU_0210
Tail sheath protein, putative; Identified by similarity to SP:P79678.
 
     0.657
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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