Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_0218Tail protein, putative; Identified by similarity to GP:19483757. (353 aa)    
Predicted Functional Partners:
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.985
DVU_0217
Tail protein, putative; Identified by similarity to GP:19483756.
 
    0.985
DVU_0214
tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.
 
    0.979
DVU_0219
Tail protein, putative; Identified by similarity to GP:19483737.
    0.967
DVU_2852
Tail protein, putative; Identified by similarity to GP:19483756.
 
    0.965
DVU_2853
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.964
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
  
 0.961
DVU_2850
Tail protein, putative; Identified by similarity to GP:19483737.
    0.956
DVU_2854
Tail protein, putative; Identified by similarity to SP:P08558.
  
 0.944
DVU_0210
Tail sheath protein, putative; Identified by similarity to SP:P79678.
 
  
 0.865
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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