Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_0220Tail fiber protein, putative. (338 aa)    
Predicted Functional Partners:
DVU_0219
Tail protein, putative; Identified by similarity to GP:19483737.
  
  
 0.822
DVU_0221
Tail fiber assembly protein, putative.
  
  
 0.821
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
       0.773
DVU_0217
Tail protein, putative; Identified by similarity to GP:19483756.
       0.772
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
       0.768
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
       0.768
DVU_0222
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.743
DVU_0213
Conserved domain protein.
  
    0.629
DVU_0223
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA0751.
  
    0.532
DVU_1490
Tail tape measure protein, putative.
  
  
 0.531
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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