STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0251Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925. (320 aa)    
Predicted Functional Partners:
DVU_0250
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.957
DVU_0133
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.701
DVU_0249
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.
     
 0.693
DVU_0246
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein; Identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326.
  
  
 0.681
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
  
   
 0.678
DVU_0132
Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.
  
    0.652
DVU_1447
CgeB family protein.
  
     0.625
aprB
Adenylylsulphate reductase, beta subunit; Identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060.
  
  
 0.622
DVU_0247
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 0.581
DVU_0590
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.570
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.