DVU_0262 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0262

Hypothetical protein; Identified by Glimmer2; putative. (184 aa)

Predicted Functional Partners:

DVU_0260

0.931

DVU_0261

0.931

DVU_0263

0.915

DVU_0259

0.716

DVU_0265

0.715

DVU_0264

0.714

DVU_0266

0.708

DVU_0267

0.620

DVU_0258

0.484

DVU_0268

0.436

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0258	DVU_0259	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	0.617
DVU_0258	DVU_0260	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator; Identified by match to protein family HMM PF00072.	0.835
DVU_0258	DVU_0261	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Identified by match to protein family HMM PF00582.	0.874
DVU_0258	DVU_0262	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Hypothetical protein; Identified by Glimmer2; putative.	0.484
DVU_0258	DVU_0263	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Acidic cytochrome c3; Identified by similarity to SP:P94690.	0.829
DVU_0258	DVU_0264	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754.	0.630
DVU_0258	DVU_0265	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Membrane protein, putative.	0.801
DVU_0258	DVU_0266	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Hypothetical protein; Identified by Glimmer2; putative.	0.839
DVU_0259	DVU_0258	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.617
DVU_0259	DVU_0260	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Response regulator; Identified by match to protein family HMM PF00072.	0.910
DVU_0259	DVU_0261	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Identified by match to protein family HMM PF00582.	0.841
DVU_0259	DVU_0262	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Hypothetical protein; Identified by Glimmer2; putative.	0.716
DVU_0259	DVU_0263	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Acidic cytochrome c3; Identified by similarity to SP:P94690.	0.841
DVU_0259	DVU_0264	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754.	0.710
DVU_0259	DVU_0265	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Membrane protein, putative.	0.757
DVU_0259	DVU_0266	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Hypothetical protein; Identified by Glimmer2; putative.	0.759
DVU_0259	DVU_0267	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Hypothetical protein; Identified by Glimmer2; putative.	0.661
DVU_0259	DVU_0268	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	Hypothetical protein; Identified by Glimmer2; putative.	0.409
DVU_0260	DVU_0258	Response regulator; Identified by match to protein family HMM PF00072.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.835
DVU_0260	DVU_0259	Response regulator; Identified by match to protein family HMM PF00072.	DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.	0.910

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About