STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0262Hypothetical protein; Identified by Glimmer2; putative. (184 aa)    
Predicted Functional Partners:
DVU_0260
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.916
DVU_0261
Identified by match to protein family HMM PF00582.
  
    0.915
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
    0.914
DVU_0259
DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.
  
    0.714
DVU_0264
Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754.
  
    0.714
DVU_0265
Membrane protein, putative.
  
    0.714
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.709
DVU_0267
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.612
DVU_0268
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.441
DVU_0258
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
       0.421
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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