Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0267Hypothetical protein; Identified by Glimmer2; putative. (51 aa)    
Predicted Functional Partners:
DVU_0265
Membrane protein, putative.
  
    0.790
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.790
DVU_0264
Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754.
  
    0.749
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
    0.680
DVU_0259
DNA-binding response regulator; Identified by similarity to SP:P33394; match to protein family HMM PF00072.
  
    0.661
DVU_0261
Identified by match to protein family HMM PF00582.
  
    0.623
DVU_0262
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.620
DVU_0260
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.607
DVU_0268
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.564
DVU_0269
Transcriptional regulator, rrf2 protein, putative; Identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738.
  
    0.401
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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