STRINGSTRING
DVU_0291 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0291" - ABC transporter, ATP-binding protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0291ABC transporter, ATP-binding protein; Identified by similarity to SP-P16676; match to protein family HMM PF00005 (354 aa)    
Predicted Functional Partners:
DVU_3072
ABC transporter, permease protein, putative; Identified by similarity to SP-P76224; match to protein family HMM PF00528 (644 aa)
 
  0.968
DVU_0292
Uncharacterized protein; Identified by Glimmer2; putative (368 aa)
              0.885
DVU_2779
Extracellular solute-binding protein, putative; Identified by similarity to OMNI-NTL02SC3299; match to protein family HMM PF01547 (461 aa)
     
    0.855
DVU_0290
annotation not available (202 aa)
              0.774
potB
Polyamine ABC transporter, permease protein; Identified by similarity to SP-P23860; match to protein family HMM PF00528 (295 aa)
 
  0.712
potC
Polyamine ABC transporter, permease protein; Identified by similarity to SP-P23859; match to protein family HMM PF00528 (257 aa)
 
 
  0.672
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI-NTL01LI0216; match to protein family HMM PF00528 (293 aa)
 
 
  0.648
DVU_3164
ABC transporter, permease protein; Identified by similarity to OMNI-TM0598; match to protein family HMM PF00528 (277 aa)
 
 
  0.637
DVU_3162
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP-P10904; match to protein family HMM PF01547 (431 aa)
 
 
  0.606
cysS
Cysteine--tRNA ligase; Identified by similarity to SP-Q06752; match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family (485 aa)
          0.545
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (12%) [HD]