STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0304Hypothetical protein; Identified by Glimmer2; putative. (93 aa)    
Predicted Functional Partners:
DVU_0303
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.971
DVU_0907
Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443.
  
     0.612
DVU_0302
Chemotaxis protein CheX, putative; Identified by similarity to GP:3493637.
 
    0.521
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family.
  
    0.514
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
  
    0.513
DVU_0305
Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037.
  
    0.499
DVU_1724
Phage uncharacterized protein, putative.
  
     0.462
DVU_0362
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111.
  
     0.436
DVU_0584
Transposase, putative; Identified by similarity to OMNI:NTL01NM00438.
  
     0.430
DVU_0359
HesB-like domain.
  
    0.425
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.