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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_0318TPR domain protein; Identified by match to protein family HMM PF00515. (187 aa)    
Predicted Functional Partners:
DVU_0410
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
 
 
 
 0.781
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.776
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.769
DVU_1441
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.763
DVU_1447
CgeB family protein.
  
     0.763
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   
 0.761
DVU_1464
Identified by match to protein family HMM PF01075.
 
     0.757
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
   
 0.753
DVU_2445
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.748
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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