STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0318TPR domain protein; Identified by match to protein family HMM PF00515. (187 aa)    
Predicted Functional Partners:
DVU_0410
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_1441
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.834
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.773
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.772
DVU_1447
CgeB family protein.
  
     0.763
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   
 0.763
DVU_1464
Identified by match to protein family HMM PF01075.
 
     0.758
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.752
DVU_2445
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.748
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
  
    0.740
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (28%) [HD]