Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
DVU_0342Identified by match to protein family HMM PF01370. (304 aa)    
Predicted Functional Partners:
DVU_0338
Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702.
    0.958
ugd
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 0.933
DVU_2996
Identified by match to protein family HMM PF01370.
  
  
 
0.927
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
0.926
DVU_0343
Identified by similarity to SP:P23522; match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
 
    0.915
galU
UTP-glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.
    
 0.908
DVU_2322
UTP--glucose-1-phosphate uridylyltransferase, putative; Identified by match to protein family HMM PF01704.
   
 
 0.906
DVU_0295
Amine oxidase, flavin-containing.
    
 0.903
DVU_0072
Glucose-1-phosphate cytidylyl-transferase; Identified by similarity to SP:P26396; match to protein family HMM PF00483.
  
 0.879
DVU_0697
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.858
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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