STRINGSTRING
DVU_0343 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0343" - Identified by similarity to SP:P23522 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0343Identified by similarity to SP-P23522; match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family (260 aa)    
Predicted Functional Partners:
DVU_0342
Identified by match to protein family HMM PF01370 (304 aa)
 
      0.982
DVU_0341
3-deoxy-D-manno-octulosonate cytidylyltransferase; Identified by similarity to SP-P42216; match to protein family HMM PF02348 (256 aa)
          0.861
DVU_0462
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP-P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 (391 aa)
           
  0.516
DVU_0338
Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702 (213 aa)
 
          0.510
DVU_0875
Identified by match to protein family HMM PF01557 (259 aa)
   
   
  0.507
DVU_0339
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (301 aa)
 
          0.464
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (292 aa)
   
   
  0.460
DVU_0340
Acetyltransferase, CysE/LacA/LpxA/NodL family; Identified by similarity to SP-P26839; match to protein family HMM PF00132 (197 aa)
         
  0.431
DVU_0173
Thiosulfate reductase, putative; Identified by similarity to SP-P37600; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 (733 aa)
       
      0.410
DVU_3119
Identified by match to protein family HMM PF00501 (564 aa)
     
        0.405
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (19%) [HD]