Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0348Hypothetical protein; Identified by Glimmer2; putative. (574 aa)    
Predicted Functional Partners:
DVU_0347
Transferase, hexapeptide repeat family; Identified by match to protein family HMM PF00132.
  
    0.753
DVU_0349
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
  
    0.749
DVU_0351
Cytidine 5'monophosphate N-acetylneuraminic acid synthetase/polysaccharide biosynthesis protein; Identified by similarity to SP:P39627; similar to GP:4741793.
       0.722
spsF
Spore coat polysaccharide biosynthesis protein spsF; Identified by match to protein family HMM PF02348.
  
    0.672
DVU_0352
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.647
DVU_0346
Membrane protein, putative.
  
    0.508
DVU_0362
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111.
    
   0.415
DVU_0353
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
       0.406
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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