STRINGSTRING
spsF protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"spsF" - Spore coat polysaccharide biosynthesis protein spsF in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsFSpore coat polysaccharide biosynthesis protein spsF; Identified by match to protein family HMM PF02348 (227 aa)    
Predicted Functional Partners:
DVU_0351
Identified by similarity to SP-P39627; similar to GP-4741793 (544 aa)
 
          0.972
DVU_0349
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102 (352 aa)
          0.963
DVU_0352
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (393 aa)
 
          0.907
DVU_3008
Identified by match to protein family HMM PF03102 (358 aa)
          0.805
DVU_0348
Uncharacterized protein; Identified by Glimmer2; putative (574 aa)
              0.695
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP-P30949; match to protein family HMM PF00202; match to protein family HMM TIGR00713; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily (423 aa)
            0.672
DVU_0347
Transferase, hexapeptide repeat family; Identified by match to protein family HMM PF00132 (223 aa)
              0.663
DVU_0353
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465 (357 aa)
 
          0.585
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (21%) [HD]