Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0359HesB-like domain. (108 aa)    
Predicted Functional Partners:
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
 
 0.990
DVU_0664
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
 
 0.797
DVU_2553
Identified by match to protein family HMM PF01106.
  
 
 0.714
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
     0.669
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.638
DVU_2427
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.594
DVU_1022
SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978.
  
 
 0.572
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.569
DVU_0883
Glutaredoxin, putative; Identified by match to protein family HMM PF00462.
  
  
 0.541
DVU_0258
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
   
 0.506
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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