Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Transcriptional regulator, putative; Identified by match to protein family HMM PF00027 (225 aa)
Predicted Functional Partners:
Thioredoxin, putative; Identified by similarity to SP-P80579 (104 aa)
Thioredoxin reductase; Identified by similarity to SP-P50971; match to protein family HMM PF00070; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (305 aa)
Sulfatase, putative; Identified by match to protein family HMM PF00884 (520 aa)
Uncharacterized protein; Identified by Glimmer2; putative (88 aa)
Transcriptional regulator, putative; Identified by similarity to SP-P03019; match to protein family HMM PF00027 (223 aa)
Identified by match to protein family HMM PF00208 (409 aa)
Protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (1513 aa)
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1385 aa)
Uncharacterized protein; Identified by Glimmer2; putative (203 aa)
Na+/H+ antiporter NhaC; Identified by similarity to SP-P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931 (463 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough