Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_0380Sulfatase, putative; Identified by match to protein family HMM PF00884. (520 aa)    
Predicted Functional Partners:
DVU_0379
Transcriptional regulator, putative; Identified by match to protein family HMM PF00027.
  
   0.703
DVU_0378
Thioredoxin, putative; Identified by similarity to SP:P80579.
  
  
 0.684
trxB-1
Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.
 
    0.677
nhaC-1
Na+/H+ antiporter NhaC; Identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931.
  
    0.644
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
  
     0.601
DVU_0376
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.594
DVU_2611
Conserved hypothetical protein.
  
    0.581
DVU_0375
Identified by match to protein family HMM PF00208.
  
  
 0.563
DVU_0374
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.
 
    0.549
DVU_1724
Phage uncharacterized protein, putative.
  
    0.547
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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