Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0382Hypothetical protein; Identified by Glimmer2; putative. (99 aa)    
Predicted Functional Partners:
nhaC-1
Na+/H+ antiporter NhaC; Identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931.
  
    0.562
DVU_0380
Sulfatase, putative; Identified by match to protein family HMM PF00884.
  
    0.504
DVU_0383
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.469
DVU_2733
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
   
    0.458
DVU_0379
Transcriptional regulator, putative; Identified by match to protein family HMM PF00027.
  
    0.435
DVU_0376
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.400
trxB-1
Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.
  
    0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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