flr protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0385	DVU_0386	DVU_0385	DVU_0386	Hypothetical protein; Identified by Glimmer2; putative.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.528
DVU_0385	flr	DVU_0385	DVU_0384	Hypothetical protein; Identified by Glimmer2; putative.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.567
DVU_0386	DVU_0385	DVU_0386	DVU_0385	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Hypothetical protein; Identified by Glimmer2; putative.	0.528
DVU_0386	flr	DVU_0386	DVU_0384	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.467
DVU_0449	DVU_0462	DVU_0449	DVU_0462	Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	0.713
DVU_0449	flr	DVU_0449	DVU_0384	Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.466
DVU_0449	ribAB	DVU_0449	DVU_1199	Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.583
DVU_0462	DVU_0449	DVU_0462	DVU_0449	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.713
DVU_0462	aroK-2	DVU_0462	DVU_2521	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.754
DVU_0462	flr	DVU_0462	DVU_0384	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.436
DVU_0462	ribAB	DVU_0462	DVU_1199	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.569
DVU_2318	flr	DVU_2318	DVU_0384	Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.495
DVU_2318	rr	DVU_2318	DVU_3094	Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.	Rubrerythrin; May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide.	0.794
DVU_2422	flr	DVU_2422	DVU_0384	Identified by match to protein family HMM PF00881.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.909
aroK-2	DVU_0462	DVU_2521	DVU_0462	Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.	0.754
aroK-2	flr	DVU_2521	DVU_0384	Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.601
cyf	flr	DVU_1817	DVU_0384	Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase.	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	0.461
flr	DVU_0385	DVU_0384	DVU_0385	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	Hypothetical protein; Identified by Glimmer2; putative.	0.567
flr	DVU_0386	DVU_0384	DVU_0386	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.467
flr	DVU_0449	DVU_0384	DVU_0449	Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.	Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.466

page 1 of 2

Server load: low (28%) [HD]

Share

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About