Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0400Hypothetical protein; Identified by Glimmer2; putative. (183 aa)    
Predicted Functional Partners:
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
     0.772
DVU_2522
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.770
DVU_0401
Hypothetical protein; Identified by Glimmer2; putative.
       0.732
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
 
    0.720
DVU_0691
Membrane protein, putative.
  
    0.706
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.701
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.661
DVU_2964
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.646
DVU_1447
CgeB family protein.
  
     0.634
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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