STRINGSTRING
DVU_0410 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0410" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0410Uncharacterized protein; Identified by Glimmer2; putative (201 aa)    
Predicted Functional Partners:
DVU_2444
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (297 aa)
 
 
      0.898
DVU_2082
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (297 aa)
 
 
      0.897
DVU_0409
Uncharacterized protein; Identified by Glimmer2; putative (116 aa)
              0.886
csrA
Translational regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5’-UTR at or near the Shine-Dalgarno sequence preventing ribosome- binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW (78 aa)
     
      0.872
DVU_0411
Identified by match to protein family HMM PF01075 (557 aa)
 
          0.848
fliW
Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum; Belongs to the FliW family (173 aa)
 
 
      0.841
flgM
Negative regulator of flagellin synthesis FlgM; Identified by similarity to SP-P39809; match to protein family HMM PF04316 (104 aa)
 
          0.790
DVU_1447
annotation not available (569 aa)
 
          0.788
DVU_3387
Uncharacterized protein; Identified by Glimmer2; putative (337 aa)
 
          0.787
DVU_2261
Uncharacterized protein; Identified by Glimmer2; putative (604 aa)
 
          0.787
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (16%) [HD]