STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0425Hypothetical protein; Identified by Glimmer2; putative. (268 aa)    
Predicted Functional Partners:
DVU_3107
Identified by match to protein family HMM PF00034.
  
     0.568
DVU_2434
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.542
atpI
ATP synthase protein I; Identified by similarity to SP:P15011.
  
     0.522
DVU_1682
GAF domain protein; Identified by match to protein family HMM PF01590.
  
     0.512
DVU_0538
Identified by match to protein family HMM PF01261.
  
     0.506
DVU_1802
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2082.
  
    0.506
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
    0.461
DVU_0305
Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037.
  
     0.459
cls
Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
  
    0.424
DVU_0831
PTS system, IID component, putative; Identified by similarity to SP:P26382.
  
     0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.