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DVU_0425 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0425" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0425Uncharacterized protein; Identified by Glimmer2; putative (268 aa)    
Predicted Functional Partners:
DVU_2516
CBS domain protein; Identified by match to protein family HMM PF00571 (161 aa)
   
          0.669
DVU_0304
Uncharacterized protein; Identified by Glimmer2; putative (93 aa)
   
          0.653
DVU_2434
Uncharacterized protein; Identified by Glimmer2; putative (135 aa)
   
          0.630
DVU_0498
Iron-sulfur cluster-binding protein, putative; Identified by similarity to OMNI-AF1263; match to protein family HMM PF00037 (501 aa)
   
          0.626
DVU_0792
annotation not available (110 aa)
   
          0.608
DVU_2611
annotation not available (519 aa)
   
          0.565
DVU_2282
Uncharacterized protein; Identified by Glimmer2; putative (516 aa)
   
          0.563
DVU_1182
Uncharacterized protein; Identified by Glimmer2; putative (304 aa)
   
          0.559
DVU_1724
annotation not available (534 aa)
   
          0.540
DVU_1813
Uncharacterized protein; Identified by Glimmer2; putative (97 aa)
   
          0.537
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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