STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0429Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037. (133 aa)    
Predicted Functional Partners:
DVU_0431
Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970.
 
 0.998
DVU_0433
Ech hydrogenase, subunit EchB, putative; Identified by similarity to GP:3005968; match to protein family HMM PF00146.
 
 
 0.996
DVU_0434
Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361.
 
 
 0.995
DVU_0432
Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family.
 
 
 0.987
DVU_0430
Ech hydrogenase, subunit EchE, putative; Identified by similarity to GP:3005971; match to protein family HMM PF00346.
 
 
 0.974
DVU_1772
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070.
  
 0.938
DVU_0082
Conserved hypothetical protein; Identified by similarity to GP:12543284.
   
 0.915
DVU_2290
Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329.
  
 0.893
DVU_2288
Hydrogenase, CooL subunit, putative; Identified by similarity to GP:1515468; match to protein family HMM PF01058.
 
 
 0.892
DVU_2287
Hydrogenase, CooK subunit, selenocysteine-containing, putative; Selenoprotein; identified by similarity to GP:1515467; match to protein family HMM PF00146.
 
 
 0.855
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.