Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0434Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361. (648 aa)    
Predicted Functional Partners:
DVU_0431
Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970.
 
 
 0.997
DVU_0429
Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037.
 
 
 0.996
DVU_1772
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070.
  
 
 0.993
DVU_0433
Ech hydrogenase, subunit EchB, putative; Identified by similarity to GP:3005968; match to protein family HMM PF00146.
  
 0.988
DVU_2286
Hydrogenase, CooM subunit, putative; Identified by similarity to GP:1515466; match to protein family HMM PF00361.
 
 
0.986
DVU_2290
Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329.
  
 
 0.966
DVU_2289
Hydrogenase, CooX subunit, putative; Identified by match to protein family HMM PF00037.
 
 
 0.965
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.956
DVU_0432
Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family.
 
  
 0.952
DVU_0430
Ech hydrogenase, subunit EchE, putative; Identified by similarity to GP:3005971; match to protein family HMM PF00346.
 
  
 0.932
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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