Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DVU_0445CBS domain protein; Identified by match to protein family HMM PF00571. (574 aa)    
Predicted Functional Partners:
DVU_0443
Exonulcease, putative; Identified by match to protein family HMM PF00929.
 
  
 0.953
DVU_0446
Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.931
DVU_0447
Membrane protein, putative; Identified by similarity to SP:P32706; match to protein family HMM PF04341.
 
  
 0.910
DVU_0444
CBS domain protein; Identified by match to protein family HMM PF00571.
 
   
0.857
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.563
DVU_0442
Identified by match to protein family HMM PF02562.
 
    0.551
DVU_2188
Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613.
  
 
 0.477
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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