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DVU_0457 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0457" - EAL domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0457EAL domain protein; Identified by match to protein family HMM PF00563 (416 aa)    
Predicted Functional Partners:
DVU_3068
GAF domain/sensory box/EAL domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (827 aa)
 
 
  0.897
DVU_3106
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (655 aa)
 
  0.870
DVU_2067
GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (373 aa)
 
  0.842
DVU_0355
Sensory box/GGDEF domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (607 aa)
 
  0.833
DVU_0940
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (243 aa)
 
  0.827
DVU_0416
GGDEF domain protein; Identified by similarity to GP-1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (372 aa)
 
  0.824
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (331 aa)
 
  0.817
DVU_0763
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (311 aa)
 
  0.808
DVU_0187
GGDEF domain protein; Identified by similarity to SP-P76237; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (363 aa)
 
  0.805
DVU_1805
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (487 aa)
 
  0.803
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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