Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0480Hypothetical protein; Identified by Glimmer2; putative. (243 aa)    
Predicted Functional Partners:
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.736
DVU_0479
Serine/threonine protein kinase, putative; Identified by similarity to SP:P54736; match to protein family HMM PF00069.
 
    0.697
DVU_0133
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.687
DVU_0132
Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.
  
     0.623
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.619
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.560
dsvD
Dissimilatory sulfite reductase B; May play an essential role in dissimilatory sulfite reduction.
 
     0.554
flgD
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.543
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.534
DVU_0770
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
    0.526
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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