STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0484ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005. (264 aa)    
Predicted Functional Partners:
DVU_2437
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687.
 
 0.959
DVU_2664
Phosphate ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:NTL03PA05367; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
0.938
DVU_0747
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.
  
0.933
DVU_0388
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.920
DVU_0968
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.915
phnC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
    
0.872
DVU_0485
Membrane protein, putative; Identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245.
 
    0.867
DVU_2299
glycine/betaine/L-proline ABC transporter, ATP binding protein; Identified by similarity to SP:P17328; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
 
     
0.862
DVU_2375
Lipoprotein releasing system, permease protein; Identified by similarity to SP:P75956; match to protein family HMM PF02687.
  
 
 0.855
DVU_3323
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 
 0.855
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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