Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0498Iron-sulfur cluster-binding protein, putative; Identified by similarity to OMNI:AF1263; match to protein family HMM PF00037. (501 aa)    
Predicted Functional Partners:
DVU_1772
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070.
 
 0.983
hydC
[Fe] hydrogenase gamma; Identified by similarity to GP:40828; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906.
  
 
 0.908
DVU_0434
Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361.
  
 
 0.902
DVU_0431
Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970.
  
 0.845
DVU_2290
Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329.
  
 0.845
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.819
gltA
Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316.
    
 0.815
DVU_0082
Conserved hypothetical protein; Identified by similarity to GP:12543284.
   
 0.802
DVU_2674
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.786
frdB
Fumarate reductase, iron-sulfur protein; Identified by similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM TIGR00384.
   
 
 0.786
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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