DVU_0509 protein (Desulfovibrio vulgaris Hildenborough)

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Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0507	DVU_0509	DVU_0507	DVU_0509	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	Conserved hypothetical protein; Identified by similarity to GP:642365.	0.654
DVU_0507	infB	DVU_0507	DVU_0508	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	0.870
DVU_0507	nusA	DVU_0507	DVU_0510	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	N utilization substance protein A; Participates in both transcription termination and antitermination.	0.737
DVU_0507	pnp	DVU_0507	DVU_0503	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.590
DVU_0507	rimP	DVU_0507	DVU_0511	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.	0.631
DVU_0507	truB	DVU_0507	DVU_0505	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.812
DVU_0509	DVU_0507	DVU_0509	DVU_0507	Conserved hypothetical protein; Identified by similarity to GP:642365.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	0.654
DVU_0509	infB	DVU_0509	DVU_0508	Conserved hypothetical protein; Identified by similarity to GP:642365.	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	0.978
DVU_0509	nusA	DVU_0509	DVU_0510	Conserved hypothetical protein; Identified by similarity to GP:642365.	N utilization substance protein A; Participates in both transcription termination and antitermination.	0.981
DVU_0509	pnp	DVU_0509	DVU_0503	Conserved hypothetical protein; Identified by similarity to GP:642365.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.756
DVU_0509	rimP	DVU_0509	DVU_0511	Conserved hypothetical protein; Identified by similarity to GP:642365.	Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.	0.964
DVU_0509	rplD	DVU_0509	DVU_1304	Conserved hypothetical protein; Identified by similarity to GP:642365.	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.649
DVU_0509	rplW	DVU_0509	DVU_1305	Conserved hypothetical protein; Identified by similarity to GP:642365.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.688
DVU_0509	rpsL	DVU_0509	DVU_1298	Conserved hypothetical protein; Identified by similarity to GP:642365.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.690
DVU_0509	truB	DVU_0509	DVU_0505	Conserved hypothetical protein; Identified by similarity to GP:642365.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.726
DVU_0509	uppS	DVU_0509	DVU_0869	Conserved hypothetical protein; Identified by similarity to GP:642365.	Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.681
infB	DVU_0507	DVU_0508	DVU_0507	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456.	0.870
infB	DVU_0509	DVU_0508	DVU_0509	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	Conserved hypothetical protein; Identified by similarity to GP:642365.	0.978
infB	nusA	DVU_0508	DVU_0510	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	N utilization substance protein A; Participates in both transcription termination and antitermination.	0.998
infB	pnp	DVU_0508	DVU_0503	Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.988

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