DVU_0540 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0540

Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (803 aa)

Predicted Functional Partners:

DVU_0539

0.879

DVU_0541

0.780

DVU_0543

0.772

DVU_0545

0.772

DVU_3062

0.771

DVU_0622

0.767

phoB

0.759

DVU_3215

0.756

DVU_2966

0.754

DVU_0544

0.747

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0539	DVU_0540	DVU_0539	DVU_0540	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.879
DVU_0539	DVU_0541	DVU_0539	DVU_0541	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Lipoprotein, putative.	0.548
DVU_0539	DVU_0543	DVU_0539	DVU_0543	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Conserved hypothetical protein.	0.519
DVU_0539	DVU_0544	DVU_0539	DVU_0544	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Hypothetical protein; Identified by Glimmer2; putative.	0.453
DVU_0539	DVU_0545	DVU_0539	DVU_0545	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582.	0.478
DVU_0540	DVU_0539	DVU_0540	DVU_0539	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	0.879
DVU_0540	DVU_0541	DVU_0540	DVU_0541	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Lipoprotein, putative.	0.780
DVU_0540	DVU_0543	DVU_0540	DVU_0543	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Conserved hypothetical protein.	0.772
DVU_0540	DVU_0544	DVU_0540	DVU_0544	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Hypothetical protein; Identified by Glimmer2; putative.	0.747
DVU_0540	DVU_0545	DVU_0540	DVU_0545	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582.	0.772
DVU_0540	DVU_0622	DVU_0540	DVU_0622	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.767
DVU_0540	DVU_2966	DVU_0540	DVU_2966	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072.	0.754
DVU_0540	DVU_3062	DVU_0540	DVU_3062	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.771
DVU_0540	DVU_3215	DVU_0540	DVU_3215	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072.	0.756
DVU_0540	phoB	DVU_0540	DVU_1083	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Phosphate regulon transcriptional regulator PhoB; Identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.759
DVU_0541	DVU_0539	DVU_0541	DVU_0539	Lipoprotein, putative.	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	0.548
DVU_0541	DVU_0540	DVU_0541	DVU_0540	Lipoprotein, putative.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.780
DVU_0541	DVU_0543	DVU_0541	DVU_0543	Lipoprotein, putative.	Conserved hypothetical protein.	0.873
DVU_0541	DVU_0544	DVU_0541	DVU_0544	Lipoprotein, putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.833
DVU_0541	DVU_0545	DVU_0541	DVU_0545	Lipoprotein, putative.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582.	0.821

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About