STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0545Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582. (141 aa)    
Predicted Functional Partners:
DVU_0544
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_0543
Conserved hypothetical protein.
  
    0.718
DVU_0542
Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582.
  
    0.648
DVU_0541
Lipoprotein, putative.
  
    0.646
DVU_0539
Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
  
    0.455
DVU_0540
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.455
DVU_0791
methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.
  
    0.454
yfiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.449
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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