STRINGSTRING
DVU_0552 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0552" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0552Uncharacterized protein; Identified by similarity to GP-14250952; match to protein family HMM PF00535 (321 aa)    
Predicted Functional Partners:
DVU_0134
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (345 aa)
 
     
  0.781
DVU_0117
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (305 aa)
 
     
  0.773
DVU_2994
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (342 aa)
   
          0.765
DVU_0076
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (334 aa)
   
          0.739
DVU_2993
Glycosyl transferase, group 1/2 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535 (887 aa)
   
      0.543
DVU_0551
High-affinity branched-chain amino acid ABC transporter ATP-binding protein; Identified by similarity to SP-P22731; match to protein family HMM PF00005 (234 aa)
              0.466
DVU_0550
High-affinity branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP-P22730; match to protein family HMM PF00005 (262 aa)
              0.466
DVU_0549
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (407 aa)
              0.466
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (302 aa)
              0.423
DVU_2354
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (415 aa)
   
          0.414
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (15%) [HD]