STRINGSTRING
DVU_0583 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0583" - Lipoprotein, putative in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0583Lipoprotein, putative; Identified by match to protein family HMM PF01094 (423 aa)    
Predicted Functional Partners:
DVU_0582
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (672 aa)
 
          0.920
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072 (233 aa)
              0.804
DVU_0584
Transposase, putative; Identified by similarity to OMNI-NTL01NM00438 (312 aa)
 
          0.715
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (302 aa)
 
   
  0.454
livH
High-affinity branched-chain amino acid ABC ransporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (306 aa)
 
   
  0.448
DVU_0713
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (301 aa)
 
   
  0.439
DVU_3022
Sensory box histidine kinase/response regulator; Identified by similarity to OMNI-NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (1139 aa)
 
          0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (26%) [HD]