Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_0590Hypothetical protein; Identified by Glimmer2; putative. (134 aa)    
Predicted Functional Partners:
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
   
  
 0.697
DVU_0247
Response regulator; Identified by match to protein family HMM PF00072.
      
 0.689
DVU_0250
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.689
DVU_0249
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.
   
  
 0.593
DVU_0591
Methyl-accepting chemotaxis protein; Identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672.
       0.453
rex
AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
      
 0.426
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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