lytS protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lytS

Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518. (571 aa)

Predicted Functional Partners:

lytR

0.998

DVU_0749

0.907

DVU_0681

0.898

DVU_3269

0.794

DVU_2472

0.697

DVU_2281

0.693

acpD

0.684

DVU_0622

0.678

DVU_0598

0.599

hydA

0.560

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0598	lytR	DVU_0598	DVU_0596	Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554.	DNA-binding response regulator LytR; Identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397.	0.426
DVU_0598	lytS	DVU_0598	DVU_0597	Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.599
DVU_0622	DVU_0681	DVU_0622	DVU_0681	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.980
DVU_0622	DVU_2281	DVU_0622	DVU_2281	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.980
DVU_0622	DVU_3269	DVU_0622	DVU_3269	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.986
DVU_0622	lytS	DVU_0622	DVU_0597	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.678
DVU_0681	DVU_0622	DVU_0681	DVU_0622	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.980
DVU_0681	DVU_2281	DVU_0681	DVU_2281	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.703
DVU_0681	DVU_3269	DVU_0681	DVU_3269	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.914
DVU_0681	lytS	DVU_0681	DVU_0597	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.898
DVU_0749	lytR	DVU_0749	DVU_0596	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	DNA-binding response regulator LytR; Identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397.	0.432
DVU_0749	lytS	DVU_0749	DVU_0597	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.907
DVU_2281	DVU_0622	DVU_2281	DVU_0622	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.980
DVU_2281	DVU_0681	DVU_2281	DVU_0681	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.703
DVU_2281	DVU_3269	DVU_2281	DVU_3269	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.910
DVU_2281	lytS	DVU_2281	DVU_0597	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.693
DVU_2472	lytS	DVU_2472	DVU_0597	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2269; match to protein family HMM PF03065.	Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518.	0.697
DVU_3269	DVU_0622	DVU_3269	DVU_0622	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.986
DVU_3269	DVU_0681	DVU_3269	DVU_0681	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.914
DVU_3269	DVU_2281	DVU_3269	DVU_2281	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.910

page 1 of 2

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About