Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0609Lipoprotein, putative; Identified by similarity to OMNI:NTL01SM01830. (211 aa)    
Predicted Functional Partners:
DVU_0610
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470.
 
   0.991
DVU_0611
ABC transporter, ATP-binding protein; Identified by similarity to GP:21109946; match to protein family HMM PF00005.
 
    0.956
DVU_0612
STAS domain protein; Identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
  
 0.927
DVU_1244
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470.
  
   0.559
DVU_0047
Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.556
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
    
   0.556
DVU_0784
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519.
   
    0.488
DVU_3227
Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.480
DVU_0608
Methyl-accepting chemotaxis protein; Identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743.
       0.473
cpoB-2
TPR domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.457
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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