Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0612STAS domain protein; Identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056. (406 aa)    
Predicted Functional Partners:
DVU_0611
ABC transporter, ATP-binding protein; Identified by similarity to GP:21109946; match to protein family HMM PF00005.
 
 0.998
DVU_0610
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470.
 
 0.997
DVU_1245
ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
 
 0.995
DVU_1244
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470.
 
 0.985
DVU_0609
Lipoprotein, putative; Identified by similarity to OMNI:NTL01SM01830.
 
  
 0.927
DVU_1246
Membrane protein, putative; Identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
  
  
 
0.923
DVU_1243
Conserved hypothetical protein; Identified by similarity to GP:22799047.
  
 
 0.862
DVU_1431
Hpt domain protein/STAS domain protein; Identified by match to protein family HMM PF01627; match to protein family HMM PF01740.
   
 
 0.630
DVU_1449
Anti-anti-sigma factor, putative; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.608
DVU_1995
Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.608
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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