Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0632Identified by match to protein family HMM PF00190. (205 aa)    
Predicted Functional Partners:
DVU_0633
Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
  
    0.800
DVU_0634
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.782
DVU_0635
Identified by match to protein family HMM PF02366.
 
    0.774
DVU_0631
Conserved hypothetical protein; Identified by similarity to GP:14041200.
       0.424
DVU_0281
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
  
  
 0.419
DVU_0327
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
  
  
 0.419
DVU_1255
Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.
  
    0.416
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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