STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0635Identified by match to protein family HMM PF02366. (528 aa)    
Predicted Functional Partners:
DVU_0632
Identified by match to protein family HMM PF00190.
 
    0.777
DVU_0634
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.768
DVU_0633
Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
  
    0.757
DVU_2052
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.667
DVU_0584
Transposase, putative; Identified by similarity to OMNI:NTL01NM00438.
  
    0.586
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.558
DVU_2999
methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551.
  
  
 0.511
DVU_3013
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.495
DVU_0258
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
  
 0.494
DVU_0362
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111.
 
     0.466
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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