Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0638Membrane protein, putative; Identified by similarity to OMNI:CT0045. (288 aa)    
Predicted Functional Partners:
DVU_0691
Membrane protein, putative.
  
     0.761
DVU_0651
Membrane protein, putative.
  
     0.679
DVU_1073
Conserved domain protein; Identified by similarity to OMNI:NT01MC2073.
  
     0.665
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
  
    0.641
DVU_3227
Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
    0.615
DVU_1339
Lipoprotein, putative.
  
     0.610
DVU_0821
Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC2073.
  
    0.605
DVU_1338
Conserved hypothetical protein; Identified by similarity to OMNI:SO3257.
  
     0.588
DVU_2485
Membrane protein, putative.
  
     0.563
DVU_2522
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.560
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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