Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pomAChemotaxis protein PomA; Identified by similarity to SP:O06873; match to protein family HMM PF01618. (250 aa)    
Predicted Functional Partners:
pomB
Chemotaxis protein PomB; Identified by similarity to GP:2130949; match to protein family HMM PF00691.
 
 0.999
DVU_0049
OmpA family protein; Identified by similarity to SP:O07887; match to protein family HMM PF00691.
 
 0.990
DVU_0048
Chemotaxis protein MotB; Identified by similarity to SP:O07887; match to protein family HMM PF00691.
 
 0.989
DVU_2228
motB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
 
 0.988
fliG
Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706; match to protein family HMM TIGR00207.
 
  
 0.979
DVU_2609
Chemotaxis MotB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
 
 0.974
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.970
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
 
  
 0.922
fliP
Flagellar biosynthetic protein fliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.910
fliN
Flagellar motor switch protein FliN; Identified by similarity to SP:P15070; match to protein family HMM PF01052.
 
  
 0.908
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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