Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0641Conserved hypothetical protein; Identified by similarity to OMNI:TM0735. (382 aa)    
Predicted Functional Partners:
pomB
Chemotaxis protein PomB; Identified by similarity to GP:2130949; match to protein family HMM PF00691.
 
    0.835
pomA
Chemotaxis protein PomA; Identified by similarity to SP:O06873; match to protein family HMM PF01618.
 
    0.825
fliW
Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. Belongs to the FliW family.
 
     0.701
DVU_0998
Identified by match to protein family HMM PF01075.
   
    0.590
DVU_3231
Flagellar biosynthesis protein FlhF, putative; Identified by similarity to SP:Q01960; match to protein family HMM PF00448.
 
   
 0.536
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP:P31068.
 
     0.478
DVU_1446
Identified by match to protein family HMM PF01075.
  
    0.450
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
 
     0.422
DVU_0411
Identified by match to protein family HMM PF01075.
   
    0.407
DVU_1055
Identified by match to protein family HMM PF01075.
   
    0.407
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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