STRINGSTRING
DVU_0649 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0649" - Iron compound ABC transporter, permease protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0649Iron compound ABC transporter, permease protein; Identified by similarity to PIR-S54438; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (351 aa)    
Predicted Functional Partners:
DVU_0648
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP-P07821; match to protein family HMM PF00005 (271 aa)
  0.999
DVU_0647
Iron compound ABC transporter, periplasmic iron compount-binding protein, putative; Identified by similarity to OMNI-DRB0007; match to protein family HMM PF01497 (304 aa)
 
  0.995
DVU_0103
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI-NTL02SC0434; match to protein family HMM PF00005 (313 aa)
 
  0.930
DVU_2491
ABC transporter, ATP-binding protein; Identified by similarity to SP-P31060; match to protein family HMM PF00005 (632 aa)
   
 
  0.915
cobI
Precorrin-2 C20-methyltransferase; Identified by similarity to SP-Q05593; match to protein family HMM PF00590; match to protein family HMM TIGR01467 (256 aa)
         
  0.901
cbiKp
Sirohydrochlorin cobaltochelatase CbiKP; Catalyzes the insertion of Co(2+) into sirohydrochlorin. To a lesser extent, is also able to insert Fe(2+) into sirohydrochlorin, yielding siroheme. Its periplasmic location means that it cannot participate in cobalamin biosynthesis and its genomic environment suggests it is likely to be associated with a heme or metal transport system (297 aa)
              0.857
DVU_2383
TonB dependent receptor domain protein; Identified by match to protein family HMM PF00593 (875 aa)
   
   
  0.792
DVU_2021
Uncharacterized protein; Identified by Glimmer2; putative (155 aa)
 
 
  0.614
DVU_0981
Multiphosphoryl transfer protein, putative; Identified by similarity to SP-P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family (854 aa)
         
  0.518
DVU_1585
Vitamin B12-dependent methionine synthase family protein; Identified by similarity to SP-P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 (804 aa)
         
  0.488
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (12%) [HD]