STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0651Membrane protein, putative. (362 aa)    
Predicted Functional Partners:
DVU_2522
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.718
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.716
DVU_0638
Membrane protein, putative; Identified by similarity to OMNI:CT0045.
  
     0.679
DVU_0647
Iron compound ABC transporter, periplasmic iron compount-binding protein, putative; Identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497.
    0.625
DVU_1241
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1126.
  
     0.593
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.570
cheV-2
Chemotaxis protein CheV; Identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584.
  
    0.539
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
 
     0.512
DVU_0400
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.477
DVU_3386
Permease, putative; Identified by match to protein family HMM PF03773.
  
    0.446
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.