STRINGSTRING
DVU_0666 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0666" - HD domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0666HD domain protein; Identified by match to protein family HMM PF01966 (332 aa)    
Predicted Functional Partners:
DVU_0667
HD domain protein; Identified by match to protein family HMM PF01966 (329 aa)
 
       
0.599
DVU_0665
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
              0.586
DVU_0664
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine (394 aa)
              0.586
DVU_3068
GAF domain/sensory box/EAL domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (827 aa)
 
 
  0.535
DVU_0940
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (243 aa)
      0.530
DVU_2432
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (1413 aa)
 
 
  0.460
DVU_1805
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (487 aa)
      0.448
DVU_3106
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (655 aa)
      0.438
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (331 aa)
      0.438
DVU_0416
GGDEF domain protein; Identified by similarity to GP-1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (372 aa)
      0.438
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]