STRINGSTRING
DVU_0667 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0667" - HD domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0667HD domain protein; Identified by match to protein family HMM PF01966 (329 aa)    
Predicted Functional Partners:
DVU_2551
HD domain protein; Identified by match to protein family HMM PF01966 (397 aa)
   
          0.783
DVU_1020
HD domain/sensory box protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229 (701 aa)
   
          0.779
DVU_0666
HD domain protein; Identified by match to protein family HMM PF01966 (332 aa)
 
       
0.599
DVU_1562
HAMP domain protein; Identified by match to protein family HMM PF00672 (964 aa)
 
 
  0.576
DVU_0668
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229 (528 aa)
   
        0.562
DVU_3068
GAF domain/sensory box/EAL domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (827 aa)
 
 
  0.500
DVU_2432
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (1413 aa)
 
 
  0.442
DVU_1959
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (797 aa)
 
 
 
  0.415
DVU_0665
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
              0.405
DVU_0664
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine (394 aa)
              0.405
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (23%) [HD]