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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0677Transglycosylase domain protein; Identified by similarity to SP:P41052. (349 aa)    
Predicted Functional Partners:
DVU_0786
Penicillin-binding protein; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
   
 
 0.597
rlpA
Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.531
DVU_2510
Penicillin-binding protein; Identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717.
  
 
 0.524
DVU_2655
Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
 
  
 0.524
DVU_0678
Hypothetical protein; Identified by Glimmer2; putative.
       0.522
DVU_0041
Transglycosylase, SLT family; Identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476.
      
 0.463
DVU_2737
RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.
  
     0.424
DVU_0975
Conserved hypothetical protein; Identified by similarity to SP:P26650; match to protein family HMM PF04751; Belongs to the UPF0307 family.
  
    0.421
DVU_2879
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
     0.414
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
     0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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