DVU_0683 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0683	DVU_0684	DVU_0683	DVU_0684	hflC protein, putative; HflC and HflK could regulate a protease.	hflK protein, putative; HflC and HflK could encode or regulate a protease.	0.999
DVU_0683	DVU_0685	DVU_0683	DVU_0685	hflC protein, putative; HflC and HflK could regulate a protease.	Phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.652
DVU_0683	DVU_1430	DVU_0683	DVU_1430	hflC protein, putative; HflC and HflK could regulate a protease.	Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.602
DVU_0683	DVU_1812	DVU_0683	DVU_1812	hflC protein, putative; HflC and HflK could regulate a protease.	Cytochrome c oxidase, subunit II, putative; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.587
DVU_0683	DVU_2379	DVU_0683	DVU_2379	hflC protein, putative; HflC and HflK could regulate a protease.	Peptidase, M16 family, putative; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.602
DVU_0683	dnaK	DVU_0683	DVU_0811	hflC protein, putative; HflC and HflK could regulate a protease.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.552
DVU_0683	engB	DVU_0683	DVU_1664	hflC protein, putative; HflC and HflK could regulate a protease.	GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.639
DVU_0683	ftsH	DVU_0683	DVU_1278	hflC protein, putative; HflC and HflK could regulate a protease.	Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.902
DVU_0683	hflX	DVU_0683	DVU_3236	hflC protein, putative; HflC and HflK could regulate a protease.	GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.	0.608
DVU_0683	yidC	DVU_0683	DVU_1077	hflC protein, putative; HflC and HflK could regulate a protease.	Inner membrane protein, 60 kDa; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.	0.656
DVU_0684	DVU_0683	DVU_0684	DVU_0683	hflK protein, putative; HflC and HflK could encode or regulate a protease.	hflC protein, putative; HflC and HflK could regulate a protease.	0.999
DVU_0684	DVU_0685	DVU_0684	DVU_0685	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.671
DVU_0684	DVU_1430	DVU_0684	DVU_1430	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.602
DVU_0684	DVU_1812	DVU_0684	DVU_1812	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Cytochrome c oxidase, subunit II, putative; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.587
DVU_0684	DVU_2379	DVU_0684	DVU_2379	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Peptidase, M16 family, putative; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.602
DVU_0684	dnaK	DVU_0684	DVU_0811	hflK protein, putative; HflC and HflK could encode or regulate a protease.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.545
DVU_0684	ftsH	DVU_0684	DVU_1278	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.948
DVU_0684	hflX	DVU_0684	DVU_3236	hflK protein, putative; HflC and HflK could encode or regulate a protease.	GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.	0.870
DVU_0684	yidC	DVU_0684	DVU_1077	hflK protein, putative; HflC and HflK could encode or regulate a protease.	Inner membrane protein, 60 kDa; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.	0.797
DVU_0685	DVU_0683	DVU_0685	DVU_0683	Phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	hflC protein, putative; HflC and HflK could regulate a protease.	0.652

page 1 of 3

Server load: low (14%) [HD]

Share

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About